Research workbench
AlphaFold monomer V2.0 prediction for photosystem II CP43 reaction center protein (P06003)
Analyse AlphaFold monomer V2.0 prediction for photosystem II CP43 reaction center… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P06003
- Type
- protein
- Length
- 473 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4d07E6a23DeB6B95bd9b90EcB67368b7e8D3B77e
- Molecule
- Photosystem II CP43 reaction center protein
- UniProt
- P06003
- Pockets
- 8 · best druggability 0.63
Structure
1 distinct chain · 55% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem II CP43 reaction center protein | protein | 473 | 55% helix, 5% strand | P06003 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 402 | 0.63 | 0.77 | 35 | empty |
| 2 | 502 | 0.61 | 0.74 | 48 | empty |
| 3 | 278 | 0.60 | 0.79 | 34 | empty |
| 4 | 83 | 0.37 | 0.77 | 15 | empty |
| 5 | 62 | 0.32 | 0.75 | 12 | empty |
Compared structures
- 3JCU · Cryo-EM structure of spinach psii-lhcii supercomplex at 3.2 ångström resolution · an experimental structure of the same protein · chain A against C, TM-score 0.94
- 3JCU · Cryo-EM structure of spinach PSII-LHCII supercomplex at 3.2 Angstrom resolution · an experimental structure of the same protein · chain A against C, TM-score 0.94
- 8Z9D · cryo-EM structure of PSII-LHCII megacomplex from spinach · an experimental structure of the same protein · chain A against C, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06003
- Elsewhere: UniProt P06003 · AlphaFold DB P06003
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