MolNFT v1 · #313715 · protein
AlphaFold monomer V2.0 prediction for photosystem II protein D1 (P51765)
P51765: “AlphaFold monomer V2.0 prediction for photosystem II protein D1 (P51765)”. 4 pockets (best druggability 0.69). MolNFT v1 #313715 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P51765
- Type
- protein
- Length
- 360 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd10960F956646DE8b64d3598984c91C2d5Af3D7b
- Molecule
- Photosystem II protein D1
- UniProt
- P51765
- Pockets
- 4 · best druggability 0.69
Structure
1 distinct chain · 58% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem II protein D1 | protein | 360 | 58% helix, 3% strand | P51765 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 547 | 0.69 | 0.79 | 58 | empty |
| 2 | 99 | 0.63 | 0.88 | 18 | empty |
| 3 | 181 | 0.49 | 0.76 | 23 | empty |
| 4 | 51 | 0.28 | 0.75 | 15 | empty |
Compared structures
- 8IR9 · XFEL structure of cyanobacterial photosystem II following one flash (1F) with a… · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 8IR6 · XFEL structure of cyanobacterial photosystem II following one flash (1F) with a… · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 8IRB · XFEL structure of cyanobacterial photosystem II following one flash (1F) with a… · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 8IR5 · XFEL structure of cyanobacterial photosystem II under dark conditions · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 8IRA · XFEL structure of cyanobacterial photosystem II following one flash (1F) with a… · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 8IRD · XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a… · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 8IRG · XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a… · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 8IRF · XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a… · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 7CJI · Photosystem II structure in the S1 state · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 7CJI · Photosystem II structure in the S1 state · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 8IR8 · XFEL structure of cyanobacterial photosystem II following one flash (1F) with a… · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 8IR7 · XFEL structure of cyanobacterial photosystem II following one flash (1F) with a… · an experimental structure of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P51765
- Elsewhere: UniProt P51765 · AlphaFold DB P51765
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