MolNFT v1 · #311057 · protein
AlphaFold monomer V2.0 prediction for pre-mRNA-splicing factor ATP- dependent RNA helicase PRP16 (P15938)
P15938 · Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16: “AlphaFold monomer V2.0 prediction for pre-mRNA-splicing factor ATP- dependent RNA helicase PRP16 (P15938)”. 16 pockets (best druggability 0.82). MolNFT v1 #311057 on…
- Accession
- P15938
- Type
- protein
- Length
- 1,071 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xb4D2d9c96b0D792d0b77e7147D724cc1F801ae58
- Molecule
- Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
- UniProt
- P15938
- Pockets
- 16 · best druggability 0.82
Structure
1 distinct chain · 41% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 | protein | 1071 | 41% helix, 13% strand | P15938 |
Pockets
16 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 674 | 0.82 | 0.86 | 96 | empty |
| 2 | 636 | 0.74 | 0.80 | 46 | empty |
| 3 | 183 | 0.73 | 0.90 | 32 | empty |
| 4 | 205 | 0.64 | 0.84 | 36 | empty |
| 5 | 271 | 0.54 | 0.76 | 33 | empty |
Compared structures
- 5WSG · Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom… · an experimental structure of the same protein · chain A against e, TM-score 0.56
- 5WSG · Cryo-EM structure of the catalytic step II spliceosome (C* complex) at 4.0 ångström… · an experimental structure of the same protein · chain A against e, TM-score 0.56
- 5LJ5 · Overall structure of the yeast spliceosome immediately after branching. · an experimental structure of the same protein · chain A against Q, TM-score 0.51
- 5LJ5 · Overall structure of the yeast spliceosome immediately after branching. · an experimental structure of the same protein · chain A against Q, TM-score 0.51
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15938
- Elsewhere: UniProt P15938 · AlphaFold DB P15938
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