MolNFT v1 · #303021 · protein
AlphaFold monomer V2.0 prediction for plexin-D1 (Q9Y4D7)
Q9Y4D7: “AlphaFold monomer V2.0 prediction for plexin-D1 (Q9Y4D7)”. 20 pockets (best druggability 0.83). MolNFT v1 #303021 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q9Y4D7
- Type
- protein
- Length
- 1,925 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7588De7cd930e7f73d11ce83952dfaCb7CF6a899
- Molecule
- Plexin-D1
- UniProt
- Q9Y4D7
- Pockets
- 20 · best druggability 0.83
Structure
1 distinct chain · 26% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Plexin-D1 | protein | 1925 | 26% helix, 30% strand | Q9Y4D7 |
Pockets
20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1111 | 0.83 | 0.84 | 112 | empty |
| 2 | 994 | 0.74 | 0.77 | 84 | empty |
| 3 | 852 | 0.71 | 0.76 | 65 | empty |
| 4 | 139 | 0.70 | 0.91 | 29 | empty |
| 5 | 568 | 0.66 | 0.76 | 45 | empty |
Modifications
Observed in the structure: 25 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y4D7
- Elsewhere: UniProt Q9Y4D7 · AlphaFold DB Q9Y4D7
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