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AlphaFold monomer V2.0 prediction for plexin-D1 (Q9Y4D7)

Analyse AlphaFold monomer V2.0 prediction for plexin-D1 (Q9Y4D7) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q9Y4D7
Type: protein
Length: 1,925 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x7588De7cd930e7f73d11ce83952dfaCb7CF6a899
Molecule: Plexin-D1
UniProt: Q9Y4D7
Pockets: 20 · best druggability 0.83

Structure

1 distinct chain · 26% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Plexin-D1	protein	1925	26% helix, 30% strand	Q9Y4D7

Pockets

20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1111	0.83	0.84	112	empty
2	994	0.74	0.77	84	empty
3	852	0.71	0.76	65	empty
4	139	0.70	0.91	29	empty
5	568	0.66	0.76	45	empty

Modifications

Observed in the structure: 25 disulfide (disulfide).

Compared structures

3H6N · Crystal structure of the ubiquitin-like domain of plexin D1 · an experimental structure of the same protein · chain A against A, TM-score 0.05
3H6N · Crystal Structure of the ubiquitin-like domain of plexin D1 · an experimental structure of the same protein · chain A against A, TM-score 0.05

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9Y4D7
Elsewhere: UniProt Q9Y4D7 · AlphaFold DB Q9Y4D7

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