MolNFT v1 · #285419 · protein
AlphaFold monomer V2.0 prediction for acidic phospholipase A2 homolog vipoxin a chain (P04084)
P04084: “AlphaFold monomer V2.0 prediction for acidic phospholipase A2 homolog vipoxin a chain (P04084)”. 1 pocket (best druggability 0.50). MolNFT v1 #285419 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P04084
- Type
- protein
- Length
- 122 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6DAA77C4263E74E745cA9c4D8E291e57e8991Cf5
- Molecule
- Acidic phospholipase A2 homolog vipoxin a chain
- UniProt
- P04084
- Pockets
- 1 · best druggability 0.50
Structure
1 distinct chain · 48% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Acidic phospholipase A2 homolog vipoxin a chain | protein | 122 | 48% helix, 8% strand | P04084 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 150 | 0.50 | 0.78 | 20 | empty |
Modifications
Observed in the structure: 7 disulfide (disulfide).
Compared structures
- 1JLT · Vipoxin Complex · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 1JLT · Vipoxin complex · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 1AOK · Vipoxin complex · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1AOK · Vipoxin complex · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1Q5T · GLN48 PLA2 separated from vipoxin from the venom of vipera ammodytes meridionalis. · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 1Q5T · Gln48 PLA2 separated from Vipoxin from the venom of Vipera ammodytes meridionalis. · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 1VPI · Phospholipase A2 inhibitor from vipoxin · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 1VPI · Phospholipase A2 inhibitor from vipoxin · an experimental structure of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04084
- Elsewhere: UniProt P04084 · AlphaFold DB P04084
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