MolNFT v1 · #281299 · protein

AlphaFold monomer V2.0 prediction for outer membrane protein U (A5F934)

A5F934: “AlphaFold monomer V2.0 prediction for outer membrane protein U (A5F934)”. 2 pockets (best druggability 0.80). MolNFT v1 #281299 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: A5F934
Type: protein
Length: 341 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x5DD335da0E7B6349A9761Bec7652a919dC6599C6
Molecule: Outer membrane protein U
UniProt: A5F934
Pockets: 2 · best druggability 0.80

Structure

1 distinct chain · 3% helix, 59% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Outer membrane protein U	protein	341	3% helix, 59% strand	A5F934

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	945	0.80	0.82	113	empty
2	55	0.34	0.78	17	empty

Compared structures

6EHB · OmpU, an outer membrane protein, of Vibrio cholerae · an experimental structure of the same protein · chain A against C, TM-score 0.93
6EHB · Ompu, an outer membrane protein, of vibrio cholerae · an experimental structure of the same protein · chain A against C, TM-score 0.93
6EHC · OmpUdeltaN (N-terminus deletion mutant of OmpU), outer membrane protein of Vibrio cholerae · an experimental structure of the same protein · chain A against A, TM-score 0.88
6EHC · Ompudeltan (N-terminus deletion mutant of ompu), outer membrane protein of vibrio cholerae · an experimental structure of the same protein · chain A against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A5F934
Elsewhere: UniProt A5F934 · AlphaFold DB A5F934

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