Research workbench
AlphaFold monomer V2.0 prediction for outer membrane protein U (A5F934)
Analyse AlphaFold monomer V2.0 prediction for outer membrane protein U (A5F934) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A5F934
- Type
- protein
- Length
- 341 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5DD335da0E7B6349A9761Bec7652a919dC6599C6
- Molecule
- Outer membrane protein U
- UniProt
- A5F934
- Pockets
- 2 · best druggability 0.80
Structure
1 distinct chain · 3% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Outer membrane protein U | protein | 341 | 3% helix, 59% strand | A5F934 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 945 | 0.80 | 0.82 | 113 | empty |
| 2 | 55 | 0.34 | 0.78 | 17 | empty |
Compared structures
- 6EHB · OmpU, an outer membrane protein, of Vibrio cholerae · an experimental structure of the same protein · chain A against C, TM-score 0.93
- 6EHB · Ompu, an outer membrane protein, of vibrio cholerae · an experimental structure of the same protein · chain A against C, TM-score 0.93
- 6EHC · OmpUdeltaN (N-terminus deletion mutant of OmpU), outer membrane protein of Vibrio cholerae · an experimental structure of the same protein · chain A against A, TM-score 0.88
- 6EHC · Ompudeltan (N-terminus deletion mutant of ompu), outer membrane protein of vibrio cholerae · an experimental structure of the same protein · chain A against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5F934
- Elsewhere: UniProt A5F934 · AlphaFold DB A5F934
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