MolNFT v1 · #273862 · protein
AlphaFold monomer V2.0 prediction for NEDD8 ultimate buster 1 (P54729)
P54729: “AlphaFold monomer V2.0 prediction for NEDD8 ultimate buster 1 (P54729)”. 11 pockets (best druggability 0.77). MolNFT v1 #273862 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P54729
- Type
- protein
- Length
- 614 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB44F19a0cb161828322eEEd13F55d4C3C34938d2
- Molecule
- NEDD8 ultimate buster 1
- UniProt
- P54729
- Pockets
- 11 · best druggability 0.77
Structure
1 distinct chain · 61% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NEDD8 ultimate buster 1 | protein | 614 | 61% helix, 5% strand | P54729 |
Pockets
11 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 692 | 0.77 | 0.82 | 53 | empty |
| 2 | 894 | 0.74 | 0.78 | 63 | empty |
| 3 | 404 | 0.69 | 0.81 | 33 | empty |
| 4 | 212 | 0.68 | 0.86 | 24 | empty |
| 5 | 255 | 0.60 | 0.79 | 27 | empty |
Compared structures
- 1VEG · Solution Structure of RSGI RUH-012, a UBA Domain from Mouse cDNA · an experimental structure of the same protein · chain A against A, TM-score 0.09
- 1VEG · Solution structure of rsgi ruh-012, a uba domain from mouse cdna · an experimental structure of the same protein · chain A against A, TM-score 0.09
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P54729
- Elsewhere: UniProt P54729 · AlphaFold DB P54729
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