Research workbench

AlphaFold monomer V2.0 prediction for NEDD8 ultimate buster 1 (P54729)

Analyse AlphaFold monomer V2.0 prediction for NEDD8 ultimate buster 1 (P54729) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: P54729
Type: protein
Length: 614 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xB44F19a0cb161828322eEEd13F55d4C3C34938d2
Molecule: NEDD8 ultimate buster 1
UniProt: P54729
Pockets: 11 · best druggability 0.77

Structure

1 distinct chain · 61% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	NEDD8 ultimate buster 1	protein	614	61% helix, 5% strand	P54729

Pockets

11 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	692	0.77	0.82	53	empty
2	894	0.74	0.78	63	empty
3	404	0.69	0.81	33	empty
4	212	0.68	0.86	24	empty
5	255	0.60	0.79	27	empty

Compared structures

1VEG · Solution Structure of RSGI RUH-012, a UBA Domain from Mouse cDNA · an experimental structure of the same protein · chain A against A, TM-score 0.09
1VEG · Solution structure of rsgi ruh-012, a uba domain from mouse cdna · an experimental structure of the same protein · chain A against A, TM-score 0.09

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P54729
Elsewhere: UniProt P54729 · AlphaFold DB P54729

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.