MolNFT v1 · #268843 · protein
AlphaFold monomer V2.0 prediction for na(+)-translocating NADH- quinone reductase subunit D (A5F5Y6)
A5F5Y6 · Na(+)-translocating NADH-quinone reductase subunit D: “AlphaFold monomer V2.0 prediction for na(+)-translocating NADH- quinone reductase subunit D (A5F5Y6)”. 1 pocket (best druggability 0.26). MolNFT v1 #268843 on GenesisL1: 3D…
- Accession
- A5F5Y6
- Type
- protein
- Length
- 210 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x12a9c23A431678c73C7b9dcd3C92a96E01F3b6ae
- Molecule
- Na(+)-translocating NADH-quinone reductase subunit D
- UniProt
- A5F5Y6
- Pockets
- 1 · best druggability 0.26
Structure
1 distinct chain · 76% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Na(+)-translocating NADH-quinone reductase subunit D | protein | 210 | 76% helix, 3% strand | A5F5Y6 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.26 | 0.73 | 10 | empty |
Compared structures
- 7XK7 · Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, with… · an experimental structure of the same protein · chain A against D, TM-score 0.93
- 7XK7 · Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae… · an experimental structure of the same protein · chain A against D, TM-score 0.93
- 7XK4 · Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, state 2 · an experimental structure of the same protein · chain A against D, TM-score 0.92
- 7XK4 · Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae… · an experimental structure of the same protein · chain A against D, TM-score 0.92
- 7XK3 · Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, state 1 · an experimental structure of the same protein · chain A against D, TM-score 0.92
- 7XK3 · Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae… · an experimental structure of the same protein · chain A against D, TM-score 0.92
- 7XK5 · Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, state 3 · an experimental structure of the same protein · chain A against D, TM-score 0.92
- 7XK5 · Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae… · an experimental structure of the same protein · chain A against D, TM-score 0.92
- 7XK6 · Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae… · an experimental structure of the same protein · chain A against D, TM-score 0.92
- 7XK6 · Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, with… · an experimental structure of the same protein · chain A against D, TM-score 0.92
- 8EW3 · Cryo EM structure of Vibrio cholerae NQR · an experimental structure of the same protein · chain A against D, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5F5Y6
- Elsewhere: UniProt A5F5Y6 · AlphaFold DB A5F5Y6
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