UniProt A5F5Y6
Na(+)-translocating NADH-quinone reductase subunit D (A5F5Y6)
Na(+)-translocating NADH-quinone reductase subunit D (UniProt A5F5Y6), EC 7.2.1.1: 11 experimental structures and 1 predicted model on GenesisL1, 2 ligands bound, 29 pockets. Binding sites, druggability and experiment against…
- UniProt
- A5F5Y6
- Protein
- Na(+)-translocating NADH-quinone reductase subunit D
- EC
- 7.2.1.1
- Experimental structures
- 11
- Predicted models
- 1
- Ligands
- 2
- Pockets
- 29 · 4 records with a druggable one
Structures
12 records of A5F5Y6 in the MolNFT archive: 11 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 7XK3 | Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, state 1 | electron microscopy | D | FES | 7 (best 0.84) |
| 7XK3 | Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae, state 1 | electron microscopy | D | FES | — |
| 7XK4 | Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, state 2 | electron microscopy | D | FES | 7 (best 0.84) |
| 7XK4 | Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae, state 2 | electron microscopy | D | FES | — |
| 7XK5 | Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, state 3 | electron microscopy | D | FES | — |
| 7XK5 | Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae, state 3 | electron microscopy | D | FES | — |
| 7XK6 | Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, with aurachin D-42 | electron microscopy | D | FES | 7 (best 0.84) |
| 7XK6 | Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae, with aurachin… | electron microscopy | D | FES | — |
| 7XK7 | Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, with korormicin | electron microscopy | D | PEE, FES | — |
| 7XK7 | Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae, with… | electron microscopy | D | PEE, FES | — |
| 8EW3 | Cryo EM structure of Vibrio cholerae NQR | electron microscopy | D | FES | 7 (best 0.85) |
| A5F5Y6 | AlphaFold monomer V2.0 prediction for na(+)-translocating NADH- quinone reductase subunit D (A5F5Y6) | predicted | A | — | 1 (best 0.26) |
Ligands
Experiment against prediction
- 8EW3 chain D against the predicted model A5F5Y6: TM-score 0.95, RMSD 1.32 Å
- 7XK4 chain D against the predicted model A5F5Y6: TM-score 0.95, RMSD 1.35 Å
- 7XK4 chain D against the predicted model A5F5Y6: TM-score 0.95, RMSD 1.35 Å
- 7XK7 chain D against the predicted model A5F5Y6: TM-score 0.94, RMSD 1.37 Å
- 7XK7 chain D against the predicted model A5F5Y6: TM-score 0.94, RMSD 1.37 Å
- 7XK3 chain D against the predicted model A5F5Y6: TM-score 0.94, RMSD 1.37 Å
- 7XK3 chain D against the predicted model A5F5Y6: TM-score 0.94, RMSD 1.37 Å
- 7XK5 chain D against the predicted model A5F5Y6: TM-score 0.94, RMSD 1.37 Å
- 7XK5 chain D against the predicted model A5F5Y6: TM-score 0.94, RMSD 1.37 Å
- 7XK6 chain D against the predicted model A5F5Y6: TM-score 0.94, RMSD 1.40 Å
Elsewhere
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