MolNFT v1 · #268760 · protein
AlphaFold monomer V2.0 prediction for na(+)-translocating NADH- quinone reductase subunit B (A5F5X0)
A5F5X0 · Na(+)-translocating NADH-quinone reductase subunit B: “AlphaFold monomer V2.0 prediction for na(+)-translocating NADH- quinone reductase subunit B (A5F5X0)”. 7 pockets (best druggability 0.70). MolNFT v1 #268760 on GenesisL1: 3D…
- Accession
- A5F5X0
- Type
- protein
- Length
- 415 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x71112d4fF7ebb3b617963c05f052289e073082FD
- Molecule
- Na(+)-translocating NADH-quinone reductase subunit B
- UniProt
- A5F5X0
- Pockets
- 7 · best druggability 0.70
Structure
1 distinct chain · 67% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Na(+)-translocating NADH-quinone reductase subunit B | protein | 415 | 67% helix, 0% strand | A5F5X0 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 50 | 0.70 | 0.98 | 25 | empty |
| 2 | 120 | 0.67 | 0.89 | 26 | empty |
| 3 | 177 | 0.49 | 0.77 | 24 | empty |
| 4 | 115 | 0.48 | 0.79 | 21 | empty |
| 5 | 67 | 0.44 | 0.82 | 16 | empty |
Compared structures
- 7XK6 · Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae… · an experimental structure of the same protein · chain A against B, TM-score 0.97
- 7XK6 · Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, with… · an experimental structure of the same protein · chain A against B, TM-score 0.97
- 7XK7 · Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae… · an experimental structure of the same protein · chain A against B, TM-score 0.96
- 7XK7 · Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, with… · an experimental structure of the same protein · chain A against B, TM-score 0.96
- 7XK3 · Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, state 1 · an experimental structure of the same protein · chain A against B, TM-score 0.91
- 7XK3 · Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae… · an experimental structure of the same protein · chain A against B, TM-score 0.91
- 7XK5 · Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, state 3 · an experimental structure of the same protein · chain A against B, TM-score 0.91
- 7XK5 · Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae… · an experimental structure of the same protein · chain A against B, TM-score 0.91
- 7XK4 · Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, state 2 · an experimental structure of the same protein · chain A against B, TM-score 0.91
- 7XK4 · Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae… · an experimental structure of the same protein · chain A against B, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5F5X0
- Elsewhere: UniProt A5F5X0 · AlphaFold DB A5F5X0
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