MolNFT v1 · #266030 · protein
AlphaFold monomer V2.0 prediction for lipoprotein nlpi (P0AFB1)
P0AFB1: “AlphaFold monomer V2.0 prediction for lipoprotein nlpi (P0AFB1)”. 3 pockets (best druggability 0.50). MolNFT v1 #266030 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P0AFB1
- Type
- protein
- Length
- 294 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd1A2963012bEcbC7A8f505464439Ab678C48936f
- Molecule
- Lipoprotein nlpi
- UniProt
- P0AFB1
- Pockets
- 3 · best druggability 0.50
Structure
1 distinct chain · 70% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lipoprotein nlpi | protein | 294 | 70% helix, 0% strand | P0AFB1 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 179 | 0.50 | 0.77 | 20 | empty |
| 2 | 56 | 0.30 | 0.75 | 16 | empty |
| 3 | 68 | 0.29 | 0.73 | 12 | empty |
Compared structures
- 5WQL · Structure of a PDZ-protease bound to a substrate-binding adaptor · an experimental structure of the same protein · chain A against B, TM-score 0.90
- 5WQL · Structure of a PDZ-protease bound to a substrate-binding adaptor · an experimental structure of the same protein · chain A against B, TM-score 0.90
- 8XUD · Crystal structure of adaptor NlpI in complex with endopeptidase MepS and PDZ-protease Prc · an experimental structure of the same protein · chain A against B, TM-score 0.88
- 8XUP · Crystal structure of lipoprotein NlpI in complex with MepS · an experimental structure of the same protein · chain A against A, TM-score 0.88
- 6IQU · Crystal structure of Prc with PDZ domain deletion in complex with NlpI · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 6IQU · Crystal structure of prc with PDZ domain deletion in complex with nlpi · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 6IQS · Crystal structure of prc with L245A and L340G mutations in complex with nlpi · an experimental structure of the same protein · chain A against B, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AFB1
- Elsewhere: UniProt P0AFB1 · AlphaFold DB P0AFB1
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