AlphaFold monomer V2.0 prediction for lipoprotein nlpi (P0AFB1)

Structure

1 distinct chain · 70% helix, 0% strand (DSSP).

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Compared structures

• 5WQL · Structure of a PDZ-protease bound to a substrate-binding adaptor · an experimental structure of the same protein · chain A against B, TM-score 0.90
• 5WQL · Structure of a PDZ-protease bound to a substrate-binding adaptor · an experimental structure of the same protein · chain A against B, TM-score 0.90
• 8XUD · Crystal structure of adaptor NlpI in complex with endopeptidase MepS and PDZ-protease Prc · an experimental structure of the same protein · chain A against B, TM-score 0.88
• 8XUP · Crystal structure of lipoprotein NlpI in complex with MepS · an experimental structure of the same protein · chain A against A, TM-score 0.88
• 6IQU · Crystal structure of Prc with PDZ domain deletion in complex with NlpI · an experimental structure of the same protein · chain A against A, TM-score 0.87
• 6IQU · Crystal structure of prc with PDZ domain deletion in complex with nlpi · an experimental structure of the same protein · chain A against A, TM-score 0.87
• 6IQS · Crystal structure of prc with L245A and L340G mutations in complex with nlpi · an experimental structure of the same protein · chain A against B, TM-score 0.87

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P0AFB1
• Elsewhere: UniProt P0AFB1 · AlphaFold DB P0AFB1