MolNFT v1 · #262906 · protein

AlphaFold monomer V2.0 prediction for nectin-3 (Q9JLB9)

Q9JLB9: “AlphaFold monomer V2.0 prediction for nectin-3 (Q9JLB9)”. 1 pocket (best druggability 0.39). MolNFT v1 #262906 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: Q9JLB9
Type: protein
Length: 549 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xbb2F1C7CB3A1eeFAc24fCa72cc627162D5413FD7
Molecule: Nectin-3
UniProt: Q9JLB9
Pockets: 1 · best druggability 0.39

Structure

1 distinct chain · 11% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nectin-3	protein	549	11% helix, 33% strand	Q9JLB9

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	153	0.39	0.73	22	empty

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

5B22 · Dimer structure of murine nectin-3 D1D2 · an experimental structure of the same protein · chain A against B, TM-score 0.38
5B22 · Dimer structure of murine Nectin-3 D1D2 · an experimental structure of the same protein · chain A against B, TM-score 0.38
3AXA · Crystal structure of afadin PDZ domain in complex with the C-terminal peptide from… · an experimental structure of the same protein · chain A against A, TM-score 0.08
3AXA · Crystal structure of afadin PDZ domain in complex with the C-terminal peptide from… · an experimental structure of the same protein · chain A against A, TM-score 0.08

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9JLB9
Elsewhere: UniProt Q9JLB9 · AlphaFold DB Q9JLB9

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