UniProt Q9JLB9
Nectin-3 (Q9JLB9)
Nectin-3 (UniProt Q9JLB9): 4 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 2 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q9JLB9
- Protein
- Nectin-3
- Experimental structures
- 4
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 2 · 0 records with a druggable one
Structures
5 records of Q9JLB9 in the MolNFT archive: 4 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3AXA | Crystal structure of afadin PDZ domain in complex with the C-terminal peptide from nectin-3 | x-ray diffraction | A, B | — | — |
| 3AXA | Crystal structure of afadin PDZ domain in complex with the C-terminal peptide from nectin-3 | x-ray diffraction | A, B | — | — |
| 5B22 | Dimer structure of murine Nectin-3 D1D2 | x-ray diffraction | A, B | NAG | 1 (best 0.25) |
| 5B22 | Dimer structure of murine nectin-3 D1D2 | x-ray diffraction | A, B | — | — |
| Q9JLB9 | AlphaFold monomer V2.0 prediction for nectin-3 (Q9JLB9) | predicted | A | — | 1 (best 0.39) |
Ligands
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · in 1 record
Experiment against prediction
- 5B22 chain B against the predicted model Q9JLB9: TM-score 0.98, RMSD 0.81 Å
- 5B22 chain B against the predicted model Q9JLB9: TM-score 0.98, RMSD 0.81 Å
- 5B22 chain A against the predicted model Q9JLB9: TM-score 0.96, RMSD 1.21 Å
- 5B22 chain A against the predicted model Q9JLB9: TM-score 0.96, RMSD 1.21 Å
- 3AXA chain B against the predicted model Q9QZQ1: TM-score 0.86, RMSD 2.18 Å
- 3AXA chain B against the predicted model Q9QZQ1: TM-score 0.86, RMSD 2.18 Å
- 3AXA chain A against the predicted model Q9QZQ1: TM-score 0.86, RMSD 1.96 Å
- 3AXA chain A against the predicted model Q9QZQ1: TM-score 0.86, RMSD 1.96 Å
- 3AXA chain A against the predicted model Q9JLB9: TM-score 0.28, RMSD 4.13 Å
- 3AXA chain A against the predicted model Q9JLB9: TM-score 0.28, RMSD 4.13 Å
Elsewhere
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