MolNFT v1 · #261766 · protein
AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (B5Z9W9)
B5Z9W9: “AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (B5Z9W9)”. 1 pocket (best druggability 0.51). MolNFT v1 #261766 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- B5Z9W9
- Type
- protein
- Length
- 137 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xc65cB70a906CEEA439D51B5d816F369AA26D074F
- Molecule
- Nucleoside diphosphate kinase
- UniProt
- B5Z9W9
- Pockets
- 1 · best druggability 0.51
Structure
1 distinct chain · 45% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoside diphosphate kinase | protein | 137 | 45% helix, 19% strand | B5Z9W9 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 203 | 0.51 | 0.77 | 28 | empty |
Compared structures
- 6AY1 · Crystal structure of a nucleoside diphosphate kinase ndk from helicobacter pylori · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 6AY1 · Crystal structure of a nucleoside diphosphate kinase NDK from Helicobacter pylori · an experimental structure of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5Z9W9
- Elsewhere: UniProt B5Z9W9 · AlphaFold DB B5Z9W9
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