UniProt B5Z9W9
Nucleoside diphosphate kinase (B5Z9W9)
Nucleoside diphosphate kinase (UniProt B5Z9W9): 2 experimental structures and 1 predicted model on GenesisL1, 1 pocket. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- B5Z9W9
- Protein
- Nucleoside diphosphate kinase
- Experimental structures
- 2
- Predicted models
- 1
- Pockets
- 1 · 1 record with a druggable one
Structures
3 records of B5Z9W9 in the MolNFT archive: 2 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 6AY1 | Crystal structure of a nucleoside diphosphate kinase NDK from Helicobacter pylori | x-ray diffraction | A, B, C, D, E, F, G, H | — | — |
| 6AY1 | Crystal structure of a nucleoside diphosphate kinase ndk from helicobacter pylori | x-ray diffraction | A, B, C, D, E, F, G, H | — | — |
| B5Z9W9 | AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (B5Z9W9) | predicted | A | — | 1 (best 0.51) |
Experiment against prediction
- 6AY1 chain G against the predicted model B5Z9W9: TM-score 0.99, RMSD 0.48 Å
- 6AY1 chain G against the predicted model B5Z9W9: TM-score 0.99, RMSD 0.48 Å
- 6AY1 chain A against the predicted model B5Z9W9: TM-score 0.98, RMSD 0.52 Å
- 6AY1 chain A against the predicted model B5Z9W9: TM-score 0.98, RMSD 0.52 Å
- 6AY1 chain E against the predicted model B5Z9W9: TM-score 0.99, RMSD 0.51 Å
- 6AY1 chain E against the predicted model B5Z9W9: TM-score 0.99, RMSD 0.51 Å
- 6AY1 chain B against the predicted model B5Z9W9: TM-score 0.98, RMSD 0.60 Å
- 6AY1 chain B against the predicted model B5Z9W9: TM-score 0.98, RMSD 0.60 Å
- 6AY1 chain F against the predicted model B5Z9W9: TM-score 0.95, RMSD 0.93 Å
- 6AY1 chain F against the predicted model B5Z9W9: TM-score 0.95, RMSD 0.93 Å
Elsewhere
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