MolNFT v1 · #259235 · protein
AlphaFold monomer V2.0 prediction for periplasmic nitrate reductase (Q53176)
Q53176: “AlphaFold monomer V2.0 prediction for periplasmic nitrate reductase (Q53176)”. 6 pockets (best druggability 0.82). MolNFT v1 #259235 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q53176
- Type
- protein
- Length
- 831 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x1ED4a68B4011314730adE976b56Ad4cA21b54dcD
- Molecule
- Periplasmic nitrate reductase
- UniProt
- Q53176
- Pockets
- 6 · best druggability 0.82
Structure
1 distinct chain · 35% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic nitrate reductase | protein | 831 | 35% helix, 20% strand | Q53176 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 174 | 0.82 | 0.98 | 43 | empty |
| 2 | 168 | 0.82 | 0.97 | 40 | empty |
| 3 | 175 | 0.47 | 0.76 | 27 | empty |
| 4 | 74 | 0.32 | 0.74 | 17 | empty |
| 5 | 71 | 0.29 | 0.73 | 16 | empty |
Compared structures
- 1OGY · Crystal structure of the heterodimeric nitrate reductase from rhodobacter sphaeroides · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 1OGY · Crystal structure of the heterodimeric nitrate reductase from Rhodobacter sphaeroides · an experimental structure of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q53176
- Elsewhere: UniProt Q53176 · AlphaFold DB Q53176
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