Research workbench

AlphaFold monomer V2.0 prediction for periplasmic nitrate reductase (Q53176)

Analyse AlphaFold monomer V2.0 prediction for periplasmic nitrate reductase (Q53176) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q53176
Type: protein
Length: 831 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x1ED4a68B4011314730adE976b56Ad4cA21b54dcD
Molecule: Periplasmic nitrate reductase
UniProt: Q53176
Pockets: 6 · best druggability 0.82

Structure

1 distinct chain · 35% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Periplasmic nitrate reductase	protein	831	35% helix, 20% strand	Q53176

Pockets

6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	174	0.82	0.98	43	empty
2	168	0.82	0.97	40	empty
3	175	0.47	0.76	27	empty
4	74	0.32	0.74	17	empty
5	71	0.29	0.73	16	empty

Compared structures

1OGY · Crystal structure of the heterodimeric nitrate reductase from rhodobacter sphaeroides · an experimental structure of the same protein · chain A against A, TM-score 0.95
1OGY · Crystal structure of the heterodimeric nitrate reductase from Rhodobacter sphaeroides · an experimental structure of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q53176
Elsewhere: UniProt Q53176 · AlphaFold DB Q53176

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.