MolNFT v1 · #227124 · protein

AlphaFold monomer V2.0 prediction for malate dehydrogenase, mitochondrial (P17505)

P17505: “AlphaFold monomer V2.0 prediction for malate dehydrogenase, mitochondrial (P17505)”. 2 pockets (best druggability 0.76). MolNFT v1 #227124 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: P17505
Type: protein
Length: 334 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x5881B09f2D8e743400698633641fc1cD2Ed2BE6F
Molecule: Malate dehydrogenase, mitochondrial
UniProt: P17505
Pockets: 2 · best druggability 0.76

Structure

1 distinct chain · 46% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Malate dehydrogenase, mitochondrial	protein	334	46% helix, 17% strand	P17505

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	477	0.76	0.84	56	empty
2	76	0.38	0.78	16	empty

Compared structures

1HR9 · Yeast Mitochondrial Processing Peptidase beta-E73Q Mutant Complexed with Malate… · an experimental structure of the same protein · chain A against O, TM-score 0.02
1HR9 · Yeast mitochondrial processing peptidase beta-E73Q mutant complexed with malate… · an experimental structure of the same protein · chain A against O, TM-score 0.02

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P17505
Elsewhere: UniProt P17505 · AlphaFold DB P17505

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