Research workbench
Crystal structure of the pin domain of saccharomyces cerevisiae UTP23
Analyse Crystal structure of the pin domain of saccharomyces cerevisiae UTP23 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4MJ7
- Type
- protein
- Length
- 310 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RRNA-processing protein UTP23
- UniProt
- Q12339
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RRNA-processing protein UTP23 | protein | 157 | 46% helix, 18% strand | Q12339 |
| B | RRNA-processing protein UTP23 | protein | 153 | 46% helix, 18% strand | Q12339 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 1856 Ų buried · 32 hydrogen bonds · protein-protein
Compared structures
- 4MJ7 · Crystal structure of the PIN domain of Saccharomyces cerevisiae Utp23 · the same entry in another collection · chain A against A, TM-score 1.00
- Q12339 · AlphaFold monomer V2.0 prediction for rRNA-processing protein UTP23 (Q12339) · a predicted model of the same protein · chain B against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q12339
- Elsewhere: RCSB PDB 4MJ7 · PDBe 4MJ7 · UniProt Q12339
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