Research workbench
The structure of brucella abortus plic in the hexagonal crystal form
Analyse The structure of brucella abortus plic in the hexagonal crystal form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4MIR
- Type
- protein
- Length
- 290 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein
- UniProt
- Q57ES7
- Pockets
- 6 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 62% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Putative uncharacterized protein | protein | 97 | 0% helix, 57% strand | Q57ES7 |
| C | Putative uncharacterized protein | protein | 96 | 0% helix, 67% strand | Q57ES7 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 243 | 0.70 | 0.86 | 36 | empty |
| 2 | 113 | 0.39 | 0.75 | 16 | empty |
| 3 | 74 | 0.37 | 0.77 | 19 | empty |
| 4 | 79 | 0.36 | 0.75 | 13 | empty |
| 5 | 73 | 0.33 | 0.75 | 16 | empty |
Interfaces
3 interfaces between chains.
- B–C · 1437 Ų buried · 16 hydrogen bonds · protein-protein
- A–B · 541 Ų buried · 6 hydrogen bonds · protein-protein
- A–C · 367 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 4MIR · The structure of Brucella abortus PliC in the hexagonal crystal form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q57ES7
- Elsewhere: RCSB PDB 4MIR · PDBe 4MIR · UniProt Q57ES7
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