Research workbench
Crystal structure of apo-phus, a heme-binding protein from pseudomonas aeruginosa
Analyse Crystal structure of apo-phus, a heme-binding protein from pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4MGF
- Type
- protein
- Length
- 683 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hemin degrading factor
- UniProt
- O68880
- Pockets
- 4 · best druggability 0.80
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hemin degrading factor | protein | 342 | 31% helix, 33% strand | O68880 |
| B | Hemin degrading factor | protein | 341 | 30% helix, 33% strand | O68880 |
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1081 | 0.80 | 0.82 | 76 | empty |
| 2 | 924 | 0.79 | 0.81 | 72 | empty |
| 3 | 694 | 0.70 | 0.77 | 75 | empty |
| 4 | 576 | 0.65 | 0.76 | 70 | empty |
Interfaces
1 interface between chains.
- A–B · 1168 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 4MGF · Crystal structure of apo-PhuS, a heme-binding protein from Pseudomonas aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O68880
- Elsewhere: RCSB PDB 4MGF · PDBe 4MGF · UniProt O68880
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.