Research workbench
Crystal structure of mycobacterium tuberculosis ugpb
Analyse Crystal structure of mycobacterium tuberculosis ugpb in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4MFI
- Type
- protein
- Length
- 403 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sn-glycerol-3-phosphate ABC transporter substrate-binding protein uspb
- UniProt
- A5U6I5
- Pockets
- 4 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sn-glycerol-3-phosphate ABC transporter substrate-binding protein uspb | protein | 403 | 51% helix, 17% strand | A5U6I5 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 344 | 0.57 | 0.76 | 37 | empty |
| 2 | 51 | 0.50 | 0.87 | 16 | empty |
| 3 | 78 | 0.44 | 0.81 | 23 | empty |
| 4 | 73 | 0.40 | 0.79 | 17 | empty |
Compared structures
- 4MFI · Crystal structure of Mycobacterium tuberculosis UgpB · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5U6I5
- Elsewhere: RCSB PDB 4MFI · PDBe 4MFI · UniProt A5U6I5
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