Research workbench
Crystal structure of the GAS5 gre mimic
Analyse Crystal structure of the GAS5 gre mimic in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4MCE
- Type
- RNA
- Length
- 41 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GAS5 grem fwd; GAS5 grem rev
- Ligands
- SO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | GAS5 grem fwd | rna | 10 | — | — |
| B | GAS5 grem rev | rna | 10 | — | — |
| D | GAS5 grem rev | rna | 11 | — | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
4 interfaces between chains.
- C–D · 491 Ų buried · 52 hydrogen bonds · nucleic-nucleic
- A–B · 486 Ų buried · 41 hydrogen bonds · nucleic-nucleic
- A–D · 113 Ų buried · 8 hydrogen bonds · nucleic-nucleic
- B–D · 45 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Compared structures
- 4MCE · Crystal structure of the Gas5 GRE Mimic · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4MCE · PDBe 4MCE
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