Research workbench
Structure of the mycobacterium tuberculosis peptidoglycan amidase RV3717 in complex with L-alanine-iso-D-glutamine reaction product
Analyse Structure of the mycobacterium tuberculosis peptidoglycan amidase RV3717 in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4M6G
- Type
- protein
- Length
- 216 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptidoglycan amidase RV3717
- EC
- 3.5.1.28
- UniProt
- I6Y4D2
- Ligands
- ZN
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidoglycan amidase RV3717 (EC 3.5.1.28) | protein | 216 | 38% helix, 21% strand | I6Y4D2 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 disulfide, 1 modified (disulfide, nonstandard).
Compared structures
- 4M6G · Structure of the Mycobacterium tuberculosis peptidoglycan amidase Rv3717 in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- I6Y4D2 · AlphaFold monomer V2.0 prediction for N-acetylmuramoyl-L-alanine amidase RV3717 (I6Y4D2) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I6Y4D2
- Elsewhere: RCSB PDB 4M6G · PDBe 4M6G · UniProt I6Y4D2
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