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Crystal structure of the pentatricopeptide repeat protein PPR10 from maize

Analyse Crystal structure of the pentatricopeptide repeat protein PPR10 from maize in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4M57
Type: protein
Length: 702 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Chloroplast pentatricopeptide repeat protein 10
UniProt: B8Y6I0
Pockets: 3 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 73% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Chloroplast pentatricopeptide repeat protein 10	protein	702	73% helix, 0% strand	B8Y6I0

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	64	0.39	0.79	13	empty
2	68	0.32	0.75	14	empty
3	52	0.27	0.74	11	empty

Modifications

Observed in the structure: 28 modified (engineered).

Compared structures

4M57 · Crystal structure of the pentatricopeptide repeat protein PPR10 from maize · the same entry in another collection · chain A against A, TM-score 1.00
B8Y6I0 · AlphaFold monomer V2.0 prediction for pentatricopeptide repeat- containing protein 10… · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B8Y6I0
Elsewhere: RCSB PDB 4M57 · PDBe 4M57 · UniProt B8Y6I0

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