Research workbench
Crystal structure of a green-emitter native of lampyris turkestanicus luciferase
Analyse Crystal structure of a green-emitter native of lampyris turkestanicus luciferase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4M46
- Type
- protein
- Length
- 427 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Luciferase
- EC
- 1.13.12.7
- UniProt
- Q5UFR2
- Pockets
- 7 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Luciferase (EC 1.13.12.7) | protein | 427 | 31% helix, 22% strand | Q5UFR2 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.73 | 0.98 | 20 | empty |
| 2 | 63 | 0.41 | 0.80 | 15 | empty |
| 3 | 52 | 0.40 | 0.82 | 14 | empty |
| 4 | 79 | 0.38 | 0.77 | 17 | empty |
| 5 | 51 | 0.30 | 0.77 | 15 | empty |
Compared structures
- 4M46 · Crystal structure of a green-emitter native of Lampyris turkestanicus luciferase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5UFR2
- Elsewhere: RCSB PDB 4M46 · PDBe 4M46 · UniProt Q5UFR2
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