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Crystal structure of MYO5A globular tail domain in complex with melanophilin gtbd

Analyse Crystal structure of MYO5A globular tail domain in complex with melanophilin… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
4LX2
Type
protein
Length
373 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Unconventional myosin-va; Melanophilin
UniProt
Q9Y4I1, Q91V27

Structure

x-ray diffraction · 2 distinct chains · 62% helix, 3% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AUnconventional myosin-vaprotein36163% helix, 2% strandQ9Y4I1
BMelanophilinprotein1225% helix, 17% strandQ91V27

Ligands and binding sites

  • EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–B · 708 Ų buried · 11 hydrogen bonds · protein-protein

Compared structures

  • 4LX2 · Crystal structure of Myo5a globular tail domain in complex with melanophilin GTBD · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9Y4I1 · AlphaFold monomer V2.0 prediction for unconventional myosin-va (Q9Y4I1) · a predicted model of the same protein · chain A against A, TM-score 0.98
  • Q91V27 · AlphaFold monomer V2.0 prediction for melanophilin (Q91V27) · a predicted model of the same protein · chain B against A, TM-score 0.42

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