Research workbench
Structure of the thf riboswitch bound to 7-deazaguanine
Analyse Structure of the thf riboswitch bound to 7-deazaguanine in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4LVW
- Type
- RNA
- Length
- 89 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thf riboswitch
- Ligands
- 7DG
- Pockets
- 3 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thf riboswitch | rna | 89 | — | — |
Ligands and binding sites
- 7DG · 7-deazaguanine · ligand · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 864 | 0.66 | 0.74 | 42 | empty |
| 2 | 201 | 0.47 | 0.76 | 21 | empty |
| 3 | 79 | 0.27 | 0.71 | 13 | empty |
Compared structures
- 4LVW · Structure of the THF riboswitch bound to 7-deazaguanine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4LVW · PDBe 4LVW
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