Research workbench
X-ray structure of prephenate dehydratase from streptococcus mutans
Analyse X-ray structure of prephenate dehydratase from streptococcus mutans in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4LUB
- Type
- protein
- Length
- 378 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative prephenate dehydratase
- EC
- 4.2.1.51
- UniProt
- Q8DUV6
- Pockets
- 3 · best druggability 0.44
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative prephenate dehydratase (EC 4.2.1.51) | protein | 188 | 30% helix, 39% strand | Q8DUV6 |
| B | Putative prephenate dehydratase (EC 4.2.1.51) | protein | 190 | 29% helix, 39% strand | Q8DUV6 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 157 | 0.44 | 0.75 | 25 | empty |
| 2 | 103 | 0.41 | 0.77 | 25 | empty |
| 3 | 97 | 0.32 | 0.72 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1264 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 4LUB · X-ray structure of prephenate dehydratase from Streptococcus mutans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DUV6
- Elsewhere: RCSB PDB 4LUB · PDBe 4LUB · UniProt Q8DUV6
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