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Bacterial sodium channel in low calcium, P42 space group

Analyse Bacterial sodium channel in low calcium, P42 space group in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4LTQ
Type: protein
Length: 1,088 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ion transport protein
UniProt: Q0ABW0
Pockets: 8 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 76% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, H, I, J, K	Ion transport protein	protein	136	76% helix, 0% strand	Q0ABW0

Pockets

8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1108	0.78	0.79	68	empty
2	1124	0.78	0.79	81	empty
3	1088	0.75	0.77	68	empty
4	1070	0.74	0.77	68	empty
5	296	0.52	0.74	27	empty

Interfaces

15 interfaces between chains.

B–C · 1470 Å² buried · 12 hydrogen bonds · protein-protein
I–J · 1465 Å² buried · 12 hydrogen bonds · protein-protein
H–I · 1447 Å² buried · 10 hydrogen bonds · protein-protein
A–B · 1431 Å² buried · 10 hydrogen bonds · protein-protein
C–D · 1365 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

4LTQ · Bacterial sodium channel in low calcium, P42 space group · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q0ABW0
Elsewhere: RCSB PDB 4LTQ · PDBe 4LTQ · UniProt Q0ABW0

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