Research workbench
Crystal structure of the soluble domain of a type IV secretion system protein VIRB8 from bartonella quintana toulouse
Analyse Crystal structure of the soluble domain of a type IV secretion system protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4LSO
- Type
- protein
- Length
- 141 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Type IV secretion system protein VIRB8
- UniProt
- Q6FYW3
- Pockets
- 1 · best druggability 0.28
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Type IV secretion system protein VIRB8 | protein | 141 | 36% helix, 35% strand | Q6FYW3 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.28 | 0.73 | 17 | empty |
Compared structures
- 4LSO · Crystal structure of the soluble domain of a Type IV secretion system protein VirB8 from… · the same entry in another collection · chain A against A, TM-score 1.00
- Q6FYW3 · AlphaFold monomer V2.0 prediction for type IV secretion system protein VIRB8 (Q6FYW3) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6FYW3
- Elsewhere: RCSB PDB 4LSO · PDBe 4LSO · UniProt Q6FYW3
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