Research workbench
Crystal structure of L-arabinose isomerase from lactobacillus fermentum CGMCC2921
Analyse Crystal structure of L-arabinose isomerase from lactobacillus fermentum… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4LQL
- Type
- protein
- Length
- 2,844 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- L-arabinose isomerase
- EC
- 5.3.1.4
- UniProt
- D9ILD9
- Pockets
- 20 · best druggability 0.88
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | L-arabinose isomerase (EC 5.3.1.4) | protein | 474 | 27% helix, 14% strand | D9ILD9 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 771 | 0.88 | 0.91 | 129 | empty |
| 2 | 305 | 0.83 | 0.94 | 54 | empty |
| 3 | 300 | 0.82 | 0.92 | 55 | empty |
| 4 | 488 | 0.82 | 0.88 | 88 | empty |
| 5 | 304 | 0.81 | 0.92 | 52 | empty |
Interfaces
12 interfaces between chains.
- E–F · 1571 Ų buried · 9 hydrogen bonds · protein-protein
- D–E · 1551 Ų buried · 24 hydrogen bonds · protein-protein
- B–C · 1534 Ų buried · 15 hydrogen bonds · protein-protein
- A–B · 1496 Ų buried · 10 hydrogen bonds · protein-protein
- A–C · 1397 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 4LQL · Crystal structure of L-arabinose isomerase from Lactobacillus fermentum CGMCC2921 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D9ILD9
- Elsewhere: RCSB PDB 4LQL · PDBe 4LQL · UniProt D9ILD9
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