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Crystal structure of polyprenyl diphosphate synthase A1S_2732 (target efi-509223) from acinetobacter baumannii
Analyse Crystal structure of polyprenyl diphosphate synthase A1S_2732 (target… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4LOB
- Type
- protein
- Length
- 326 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyprenyl synthetase
- EC
- 2.5.1.-
- UniProt
- J4JED5
- Ligands
- CL
- Pockets
- 2 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 77% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyprenyl synthetase (EC 2.5.1.-) | protein | 326 | 77% helix, 1% strand | J4JED5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 668 | 0.72 | 0.78 | 53 | CL |
| 2 | 80 | 0.51 | 0.84 | 15 | empty |
Compared structures
- 4LOB · Crystal structure of polyprenyl diphosphate synthase A1S_2732 (Target EFI-509223) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt J4JED5
- Elsewhere: RCSB PDB 4LOB · PDBe 4LOB · UniProt J4JED5
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