Research workbench
Crystal structure of inositol polyphosphate 5-phosphatase domain (IPP5C) of spsynaptojanin
Analyse Crystal structure of inositol polyphosphate 5-phosphatase domain (IPP5C) of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1I9Y
- Type
- protein
- Length
- 336 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphatidylinositol phosphate phosphatase
- UniProt
- O43001
- Pockets
- 2 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphatidylinositol phosphate phosphatase | protein | 336 | 30% helix, 32% strand | O43001 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.39 | 0.80 | 15 | empty |
| 2 | 82 | 0.33 | 0.75 | 18 | empty |
Compared structures
- 1I9Y · Crystal structure of inositol polyphosphate 5-phosphatase domain (IPP5C) of spsynaptojanin · the same entry in another collection · chain A against A, TM-score 1.00
- O43001 · AlphaFold monomer V2.0 prediction for inositol-1,4,5-trisphosphate 5-phosphatase 1… · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O43001
- Elsewhere: RCSB PDB 1I9Y · PDBe 1I9Y · UniProt O43001
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