Research workbench
Spinosyn forosaminyltransferase spnp
Analyse Spinosyn forosaminyltransferase spnp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4LDP
- Type
- protein
- Length
- 742 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ndp-forosamyltransferase
- UniProt
- Q9ALN7
- Pockets
- 9 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ndp-forosamyltransferase | protein | 373 | 47% helix, 15% strand | Q9ALN7 |
| B | Ndp-forosamyltransferase | protein | 369 | 45% helix, 16% strand | Q9ALN7 |
Pockets
9 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 472 | 0.68 | 0.79 | 68 | empty |
| 2 | 114 | 0.68 | 0.90 | 27 | empty |
| 3 | 248 | 0.63 | 0.82 | 34 | empty |
| 4 | 174 | 0.62 | 0.84 | 31 | empty |
| 5 | 258 | 0.59 | 0.79 | 37 | empty |
Interfaces
1 interface between chains.
- A–B · 1888 Ų buried · 28 hydrogen bonds · protein-protein
Compared structures
- 4LDP · Spinosyn Forosaminyltransferase SpnP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9ALN7
- Elsewhere: RCSB PDB 4LDP · PDBe 4LDP · UniProt Q9ALN7
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