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Crystal structure of dimeric sudan virus VP40
Analyse Crystal structure of dimeric sudan virus VP40 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4LD8
- Type
- protein
- Length
- 235 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Matrix protein VP40
- UniProt
- Q5XX06
- Pockets
- 2 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Matrix protein VP40 | protein | 235 | 20% helix, 39% strand | Q5XX06 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 505 | 0.72 | 0.81 | 40 | empty |
| 2 | 124 | 0.42 | 0.76 | 18 | empty |
Compared structures
- 4LD8 · Crystal Structure of Dimeric Sudan Virus VP40 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5XX06
- Elsewhere: RCSB PDB 4LD8 · PDBe 4LD8 · UniProt Q5XX06
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