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A superfast recovering full-length lov protein from the marine phototrophic bacterium dinoroseobacter shibae (photoexcited state)
Analyse A superfast recovering full-length lov protein from the marine phototrophic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4KUO
- Type
- protein
- Length
- 115 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Blue-light photoreceptor
- UniProt
- A8LP63
- Ligands
- RBF
- Pockets
- 1 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Blue-light photoreceptor | protein | 115 | 28% helix, 34% strand | A8LP63 |
Ligands and binding sites
- RBF · Riboflavin · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 190 | 0.72 | 0.89 | 26 | RBF |
Compared structures
- 4KUO · A superfast recovering full-length LOV protein from the marine phototrophic bacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8LP63
- Elsewhere: RCSB PDB 4KUO · PDBe 4KUO · UniProt A8LP63
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