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Crystal structure of C143A xathomonas campestris olea

Analyse Crystal structure of C143A xathomonas campestris olea in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4KTI
Type: protein
Length: 682 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 3-oxoacyl-[acp] synthase III
UniProt: Q8PDX2
Pockets: 4 · best druggability 0.78

Structure

x-ray diffraction · 2 distinct chains · 45% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	3-oxoacyl-[acp] synthase III	protein	344	45% helix, 25% strand	Q8PDX2
B	3-oxoacyl-[acp] synthase III	protein	338	46% helix, 25% strand	Q8PDX2

Pockets

4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	238	0.78	0.91	45	empty
2	505	0.75	0.83	80	empty
3	179	0.57	0.81	29	empty
4	176	0.56	0.80	23	empty

Interfaces

1 interface between chains.

A–B · 2382 Å² buried · 44 hydrogen bonds · protein-protein

Compared structures

4KTI · Crystal Structure of C143A Xathomonas campestris OleA · the same entry in another collection · chain A against A, TM-score 1.00
Q8PDX2 · AlphaFold monomer V2.0 prediction for acyl-COA:ACYL-CoA alkyltransferase (Q8PDX2) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8PDX2
Elsewhere: RCSB PDB 4KTI · PDBe 4KTI · UniProt Q8PDX2

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