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Structure of a type VI secretion system effector-immunity complex from pseudomonas protegens

Analyse Structure of a type VI secretion system effector-immunity complex from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4KT3
Type: protein
Length: 269 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein; Putative lipoprotein
UniProt: Q4KC90, Q4KC91
Pockets: 2 · best druggability 0.45

Structure

x-ray diffraction · 2 distinct chains · 45% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	141	59% helix, 6% strand	Q4KC90
B	Putative lipoprotein	protein	128	30% helix, 22% strand	Q4KC91

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	110	0.45	0.78	22	empty
2	105	0.38	0.75	15	empty

Interfaces

1 interface between chains.

A–B · 1298 Å² buried · 24 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 modified, 2 disulfide (engineered, disulfide).

Compared structures

4KT3 · Structure of a type VI secretion system effector-immunity complex from Pseudomonas… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q4KC90
Every structure of UniProt Q4KC91
Elsewhere: RCSB PDB 4KT3 · PDBe 4KT3 · UniProt Q4KC90 · UniProt Q4KC91

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