Research workbench
Bacillus subtilis yitj S BOX/SAM-I riboswitch
Analyse Bacillus subtilis yitj S BOX/SAM-I riboswitch in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4KQY
- Type
- RNA
- Length
- 119 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Yitj S BOX/SAM-I riboswitch
- Ligands
- SAM, MG
- Pockets
- 3 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Yitj S BOX/SAM-I riboswitch | rna | 119 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 808 | 0.78 | 0.82 | 55 | SAM, MG |
| 2 | 133 | 0.35 | 0.73 | 14 | empty |
| 3 | 51 | 0.32 | 0.78 | 12 | empty |
Compared structures
- 4KQY · Bacillus subtilis yitJ S box/SAM-I riboswitch · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4KQY · PDBe 4KQY
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