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Crystal structure of WHY3 from arabidopsis thaliana

Analyse Crystal structure of WHY3 from arabidopsis thaliana in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4KOQ
Type: protein
Length: 169 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Single-stranded DNA-binding protein WHY3, chloroplastic
UniProt: Q66GR6
Ligands: PO4
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 22% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Single-stranded DNA-binding protein WHY3, chloroplastic	protein	169	22% helix, 43% strand	Q66GR6

Ligands and binding sites

PO4 · Phosphate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.35	0.78	12	empty

Compared structures

4KOQ · Crystal Structure of WHY3 from Arabidopsis thaliana · the same entry in another collection · chain A against A, TM-score 1.00
Q66GR6 · AlphaFold monomer V2.0 prediction for single-stranded DNA-binding protein WHY3… · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q66GR6
Elsewhere: RCSB PDB 4KOQ · PDBe 4KOQ · UniProt Q66GR6

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