Research workbench
Crystal structure of zalpha domain from carassius auratus pkz in complex with Z-DNA
Analyse Crystal structure of zalpha domain from carassius auratus pkz in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4KMF
- Type
- protein + DNA
- Length
- 69 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Interferon-inducible and double-stranded-dependent eif- 2KINASE; DNA…
- UniProt
- Q7T2M9
- Ligands
- MN
Structure
x-ray diffraction · 2 distinct chains · 60% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Interferon-inducible and double-stranded-dependent eif- 2KINASE | protein | 62 | 60% helix, 15% strand | Q7T2M9 |
| B | DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3') | dna | 7 | — | — |
Ligands and binding sites
- MN · Manganese (II) ion · metal · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 389 Ų buried · 6 hydrogen bonds · protein-nucleic
Compared structures
- 4KMF · Crystal structure of Zalpha domain from Carassius auratus PKZ in complex with Z-DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7T2M9
- Elsewhere: RCSB PDB 4KMF · PDBe 4KMF · UniProt Q7T2M9
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