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1.8 a crystal structure of ioli protein with a binding zinc atom

Analyse 1.8 a crystal structure of ioli protein with a binding zinc atom in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1I6N
Type: protein
Length: 278 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ioli protein
UniProt: P42419
Ligands: ZN
Pockets: 1 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ioli protein	protein	278	47% helix, 18% strand	P42419

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	171	0.50	0.78	23	empty

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

1I6N · 1.8 A Crystal structure of IOLI protein with a binding zinc atom · the same entry in another collection · chain A against A, TM-score 1.00
P42419 · AlphaFold monomer V2.0 prediction for inosose isomerase (P42419) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P42419
Elsewhere: RCSB PDB 1I6N · PDBe 1I6N · UniProt P42419

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