Research workbench
Crystal structure of a lipocalin-like protein (EF0376) from enterococcus faecalis V583 at 1.60 a resolution
Analyse Crystal structure of a lipocalin-like protein (EF0376) from enterococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4KH8
- Type
- protein
- Length
- 311 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein
- UniProt
- Q838Q9
- Ligands
- UNL, SO4
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein | protein | 311 | 10% helix, 43% strand | Q838Q9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 101 | 0.58 | 0.86 | 27 | empty |
| 2 | 89 | 0.44 | 0.79 | 16 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 4KH8 · Crystal structure of a Lipocalin-like protein (EF0376) from Enterococcus faecalis V583 at… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q838Q9
- Elsewhere: RCSB PDB 4KH8 · PDBe 4KH8 · UniProt Q838Q9
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