Research workbench
NUP188(AA1-1160) from myceliophthora thermophila
Analyse NUP188(AA1-1160) from myceliophthora thermophila in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4KF7
- Type
- protein
- Length
- 1,096 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NUP188
- UniProt
- G2QD05
- Pockets
- 16 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 64% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NUP188 | protein | 1096 | 64% helix, 3% strand | G2QD05 |
Pockets
16 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1182 | 0.81 | 0.82 | 99 | empty |
| 2 | 978 | 0.78 | 0.80 | 84 | empty |
| 3 | 218 | 0.61 | 0.81 | 39 | empty |
| 4 | 255 | 0.59 | 0.79 | 32 | empty |
| 5 | 151 | 0.50 | 0.78 | 24 | empty |
Compared structures
- 4KF7 · Nup188(aa1-1160) from Myceliophthora thermophila · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G2QD05
- Elsewhere: RCSB PDB 4KF7 · PDBe 4KF7 · UniProt G2QD05
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