Research workbench
Crystal structure of a glutathione transferase family member from burkholderia graminis, target efi-507264, bound gsh, ordered domains, space group P21, FORM(1)
Analyse Crystal structure of a glutathione transferase family member from burkholderia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4KDX
- Type
- protein
- Length
- 414 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutathione S-transferase domain
- UniProt
- B1FZ96
- Ligands
- GSH
- Pockets
- 6 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Glutathione S-transferase domain | protein | 207 | 53% helix, 8% strand | B1FZ96 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 468 | 0.64 | 0.77 | 49 | GSH |
| 2 | 335 | 0.61 | 0.78 | 37 | GSH |
| 3 | 154 | 0.45 | 0.76 | 22 | empty |
| 4 | 122 | 0.39 | 0.75 | 18 | empty |
| 5 | 51 | 0.38 | 0.81 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1427 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 4KDX · Crystal structure of a glutathione transferase family member from burkholderia graminis… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1FZ96
- Elsewhere: RCSB PDB 4KDX · PDBe 4KDX · UniProt B1FZ96
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